One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/04/compare-matrices_2019-07-04.170745_9Ya5iF/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/04/compare-matrices_2019-07-04.170745_9Ya5iF/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_5-8nt_m1_shift7 ; 91 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_5-8nt_m1_shift7 (oligos_5-8nt_m1)                         
; oligos_5-8nt_m1; m=0 (reference); ncol1=18; shift=7; ncol=25; -------mkttGmCACGTGKCaamk
; Alignment reference
a	0	0	0	0	0	0	0	28	20	14	16	11	26	3	92	5	5	0	4	2	16	49	47	25	24
c	0	0	0	0	0	0	0	29	22	17	16	3	65	85	3	85	2	2	5	4	66	16	20	31	16
g	0	0	0	0	0	0	0	16	30	20	16	67	4	5	2	2	86	3	85	66	4	16	17	21	28
t	0	0	0	0	0	0	0	24	25	46	49	16	2	4	0	5	4	92	3	25	11	16	13	20	29
HY5_MA0551.1_JASPAR_shift8 (HY5:MA0551.1:JASPAR) 0.959 0.852 7.396 0.968 0.984 3 1 13 1 3 4.200 1 
; oligos_5-8nt_m1 versus HY5_MA0551.1_JASPAR (HY5:MA0551.1:JASPAR); m=1/90; ncol2=16; w=16; offset=1; strand=D; shift=8; score=    4.2; --------wwtGmCACGTGkCaww-
; cor=0.959; Ncor=0.852; logoDP=7.396; NsEucl=0.968; NSW=0.984; rcor=3; rNcor=1; rlogoDP=13; rNsEucl=1; rNSW=3; rank_mean=4.200; match_rank=1
a	0	0	0	0	0	0	0	0	103	108	52	9	150	0	310	3	1	0	2	4	24	183	94	89	0
c	0	0	0	0	0	0	0	0	60	56	55	8	165	317	1	311	5	9	1	1	279	30	62	68	0
g	0	0	0	0	0	0	0	0	68	62	30	279	1	1	9	5	311	1	317	165	8	55	56	60	0
t	0	0	0	0	0	0	0	0	89	94	183	24	4	2	0	1	3	310	0	150	9	52	108	103	0
PIF3_PIF3_2_Athamap_shift8 (PIF3:PIF3_2:Athamap) 0.878 0.829 8.248 0.950 0.957 24 2 1 8 18 10.600 2 
; oligos_5-8nt_m1 versus PIF3_PIF3_2_Athamap (PIF3:PIF3_2:Athamap); m=2/90; ncol2=17; w=17; offset=1; strand=D; shift=8; score=   10.6; --------rdrvCCACGTGGvmvsy
; cor=0.878; Ncor=0.829; logoDP=8.248; NsEucl=0.950; NSW=0.957; rcor=24; rNcor=2; rlogoDP=1; rNsEucl=8; rNSW=18; rank_mean=10.600; match_rank=2
a	0	0	0	0	0	0	0	0	15	9	10	8	1	0	32	0	0	0	0	0	9	15	11	7	4
c	0	0	0	0	0	0	0	0	2	4	2	11	26	32	0	32	0	0	0	0	10	15	13	8	11
g	0	0	0	0	0	0	0	0	9	10	13	13	5	0	0	0	32	0	32	32	11	0	8	11	6
t	0	0	0	0	0	0	0	0	6	9	7	0	0	0	0	0	0	32	0	0	2	2	0	6	11
PIF3_PIF3_1_Athamap_shift7 (PIF3:PIF3_1:Athamap) 0.810 0.810 7.677 0.942 0.940 69 3 7 20 45 28.800 19 
; oligos_5-8nt_m1 versus PIF3_PIF3_1_Athamap (PIF3:PIF3_1:Athamap); m=19/90; ncol2=18; w=18; offset=0; strand=D; shift=7; score=   28.8; -------gkrggmCACGTGrmswCk
; cor=0.810; Ncor=0.810; logoDP=7.677; NsEucl=0.942; NSW=0.940; rcor=69; rNcor=3; rlogoDP=7; rNsEucl=20; rNSW=45; rank_mean=28.800; match_rank=19
a	0	0	0	0	0	0	0	2	5	11	6	5	11	0	27	0	0	0	0	11	9	3	11	4	4
c	0	0	0	0	0	0	0	5	1	2	0	3	11	27	0	27	0	0	0	2	12	9	6	19	2
g	0	0	0	0	0	0	0	15	10	12	17	17	5	0	0	0	27	0	27	13	6	13	0	4	9
t	0	0	0	0	0	0	0	5	11	2	4	2	0	0	0	0	0	27	0	1	0	2	10	0	12
ABI5.DAP_M0201_AthalianaCistrome_rc_shift8 (ABI5.DAP:M0201:AthalianaCistrome_rc) 0.838 0.750 1.921 0.944 0.947 54 4 65 12 36 34.200 29 
; oligos_5-8nt_m1 versus ABI5.DAP_M0201_AthalianaCistrome_rc (ABI5.DAP:M0201:AthalianaCistrome_rc); m=29/90; ncol2=18; w=17; offset=1; strand=R; shift=8; score=   34.2; --------wytGMCACGTswycwyh
; cor=0.838; Ncor=0.750; logoDP=1.921; NsEucl=0.944; NSW=0.947; rcor=54; rNcor=4; rlogoDP=65; rNsEucl=12; rNSW=36; rank_mean=34.200; match_rank=29
a	0	0	0	0	0	0	0	0	201	146	28	0	149	0	595	0	0	0	12	305	23	132	297	133	152
c	0	0	0	0	0	0	0	0	87	174	123	0	446	595	0	595	0	0	294	0	296	400	98	158	167
g	0	0	0	0	0	0	0	0	117	124	50	568	0	0	0	0	595	0	289	92	119	19	39	80	59
t	0	0	0	0	0	0	0	0	190	151	394	27	0	0	0	0	0	595	0	198	157	44	161	224	217